If it were me, I'd not "center" the rear sight just to make it look pretty. No way to know if the rear sight base wasn't made a little 'off center', and the rear sight base
notch is actually aligned just the way it ought to be. Try it as the smith installed it.
Also, more often than not it's not a sight problem, but a
shooter problem, that makes some people think they need their sights drifted and adjusted.
I've drifted many a rear sight base at the request of someone, only to have to go back later and move it back the way it was originally ... once we'd finally "adjusted" the
shooter factor (trigger control and grip stability).
BTW, it sort of looks like the left side manual safety is of a different (newer) vintage than the right side ambi lever. The "flatter" lever profile is original to the older (early) guns, which is what appears to be on your gun as the ambi lever, and the "taller" lever profile is a later revision. It was supposedly revised (made a little taller) to make it easier for a user to engage the lever's raised pad.
I'd leave it alone, if it were me, as long as the levers weren't loose and fit properly, but thought I'd mention it against the chance that you would see it at some future point and wonder about it.
FWIW, there was a change in the ambi lever plunger which required a corresponding different machining of the later levers, where the head of the plungers fit in the back of the levers. The ambi lever plunger and ambi lever 'production vintage' should match, to make for the proper fit and function. I won't post some pics about the info online (copyright rules and concerns), but if you're interested, and willing to send me an email address (to
[email protected]) I can attach a couple pics to show the difference.
Congrats on the 6906. I carried and used 2-3 issued early production 6906's for a few years, and tried my best to wear one of them out.