I've had Smith tell me the same such things concerning cylinder changes. I've called and talked to one rep that would tell you one thing and the next time call another that insisted it had to be sent home for fitment.
It's a matter of shims in some cases, or trimming in other cases to get the end-shake set...or it may take nothing at all, but a cylinder. I don't own a convertible, but it seems to me that one could get (or fit themselves) a separate crane for it customized for that particular cylinder. Seems to me the quickest way would be to have a crane and guts set-up for each one and just swap the entire kit as opposed to having to remove the cylinder from the crane each time. That may be over kill, but if you had end-shake issues with either cylinder...that seems like what you would have to do.